3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09416

Details:

PFam ID : PF09416

PFam Domain Description : RNA helicase (UPF2 interacting domain)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 105

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09416	A2DPW5_TRIVA_46_199	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09416	A2DPW5_TRIVA_46_199	100

Sequence based PCA Plot of the family - PF09416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=103 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay