3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03939

Details:

PFam ID : PF03939

PFam Domain Description : Ribosomal protein L23, N-terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 196

Average sequence length: 56.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03939	Q8IE82_PLAF7_1_101	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03939	D3ZIJ2_RAT_1_27	96.9

Sequence based PCA Plot of the family - PF03939 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=20 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay