3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02813 Details: PFam ID : PF02813 PFam Domain Description : Retroviral M domain Number of Sequence in 50% Dataset : 5 Number of Sequence in Full Dataset : 16 Average sequence length: 69.0 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02813Q7LZ15_CHICK_2_3550 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02813Q83009_9RETR_2_84100 Sequence based PCA Plot of the family - PF02813 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF02813
PFam Domain Description : Retroviral M domain
Number of Sequence in 50% Dataset : 5
Number of Sequence in Full Dataset : 16
Average sequence length: 69.0
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER