Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02813
Details:

PFam ID : PF02813

PFam Domain Description : Retroviral M domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 16

Average sequence length: 69.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02813Q7LZ15_CHICK_2_3550
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02813Q83009_9RETR_2_84100
Sequence based PCA Plot of the family - PF02813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay