3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08808

Details:

PFam ID : PF08808

PFam Domain Description : RES domain

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 640

Average sequence length: 163.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08808	B4AKN3_BACPU_9_122	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08808	B1BVT3_CLOPE_76_284	98.9

Sequence based PCA Plot of the family - PF08808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=114 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay