3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02662

Details:

PFam ID : PF02662

PFam Domain Description : Recombinase Flp protein

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 299

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02662	D7CN73_SYNLT_357_459	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02662	Q1NIA2_9DELT_6_131	100

Sequence based PCA Plot of the family - PF02662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=47 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay