3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06758

Details:

PFam ID : PF06758

PFam Domain Description : Repeat of unknown function (DUF1220)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 70

Average sequence length: 59.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06758	Q4R3G0_MACFA_268_303	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06758	E7EP91_HUMAN_537_579	98.5

Sequence based PCA Plot of the family - PF06758 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=18
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay