3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03988

Details:

PFam ID : PF03988

PFam Domain Description : Repeat of Unknown Function (DUF347)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 587

Average sequence length: 55.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03988	A3J6C1_9FLAO_172_226	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03988	A3J6C1_9FLAO_172_226	97.7

Sequence based PCA Plot of the family - PF03988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay