3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01281

Details:

PFam ID : PF01281

PFam Domain Description : Ribosomal protein L9, N-terminal domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 1019

Average sequence length: 47.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01281	B8C9N4_THAPS_2_35	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01281	B8C9N4_THAPS_2_35	99.0

Sequence based PCA Plot of the family - PF01281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay