3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06026

Details:

PFam ID : PF06026

PFam Domain Description : Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 890

Average sequence length: 172.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06026	A3FQ19_CRYPV_663_953	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06026	B6KGH1_TOXGO_53_251	100

Sequence based PCA Plot of the family - PF06026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=32 Length=8
Motif3 Start=88 Length=8
Motif4 Start=144 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay