3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02257

Details:

PFam ID : PF02257

PFam Domain Description : RFX DNA-binding domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 119

Average sequence length: 67.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02257	D6ZE05_SEGRD_403_468	42.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02257	B3RT31_TRIAD_450_519	100

Sequence based PCA Plot of the family - PF02257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=22 Length=11
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay