3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01782

Details:

PFam ID : PF01782

PFam Domain Description : RimM N-terminal domain

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 1157

Average sequence length: 83.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01782	D3D946_9ACTO_6_125	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01782	D3D946_9ACTO_6_125	100

Sequence based PCA Plot of the family - PF01782 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=96 Length=17
Motif2 Start=21 Length=8
Motif3 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay