3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10493

Details:

PFam ID : PF10493

PFam Domain Description : Rough deal protein C-terminal region

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 41

Average sequence length: 442.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10493	B3MSZ4_DROAN_1499_2046	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10493	Q4RT37_TETNG_1603_2195	100

Sequence based PCA Plot of the family - PF10493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay