3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07064

Details:

PFam ID : PF07064

PFam Domain Description : RIC1

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 121

Average sequence length: 230.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07064	B6JXK1_SCHJY_754_986	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07064	E3KIH6_PUCGT_692_1023	100

Sequence based PCA Plot of the family - PF07064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=162 Length=8
Motif3 Start=100 Length=8
Motif4 Start=211 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay