3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07019

Details:

PFam ID : PF07019

PFam Domain Description : Rab5-interacting protein (Rab5ip)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 186

Average sequence length: 82.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07019	B6KF77_TOXGO_67_152	83.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07019	B1L702_KORCO_5_83	99.4

Sequence based PCA Plot of the family - PF07019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay