3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04939

Details:

PFam ID : PF04939

PFam Domain Description : Ribosome biogenesis regulatory protein (RRS1)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 153

Average sequence length: 159.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04939	A9T9E8_PHYPA_1_66	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04939	B8LE81_THAPS_96_287	100

Sequence based PCA Plot of the family - PF04939 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=8
Motif2 Start=93 Length=8
Motif3 Start=3 Length=8
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay