3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02382

Details:

PFam ID : PF02382

PFam Domain Description : RTX N-terminal domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 30

Average sequence length: 413

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02382	C0AY17_9ENTR_1_358	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02382	C0AY17_9ENTR_1_358	100

Sequence based PCA Plot of the family - PF02382 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay