3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07142

Details:

PFam ID : PF07142

PFam Domain Description : Repeat of unknown function (DUF1388)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 114

Average sequence length: 28.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07142	B4XN22_CHICK_162_301	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07142	Q28687_RABIT_216_237	86.7

Sequence based PCA Plot of the family - PF07142 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay