3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03428

Details:

PFam ID : PF03428

PFam Domain Description : Replication protein C N-terminal domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 181

Average sequence length: 163.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03428	C6AF09_BARGA_8_179	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03428	C7L941_ACEPA_13_190	99.4

Sequence based PCA Plot of the family - PF03428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay