3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03948

Details:

PFam ID : PF03948

PFam Domain Description : Ribosomal protein L9, C-terminal domain

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 1176

Average sequence length: 86.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03948	M3R_DICDI_84_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03948	B7G3E8_PHATC_136_235	100

Sequence based PCA Plot of the family - PF03948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=72 Length=8
Motif3 Start=83 Length=8
Motif4 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay