3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05773

Details:

PFam ID : PF05773

PFam Domain Description : RWD domain

Number of Sequence in 50% Dataset : 309

Number of Sequence in Full Dataset : 798

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05773	Q9XSR5_CANFA_69_142	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05773	E1ZP23_9CHLO_15_244	99.8

Sequence based PCA Plot of the family - PF05773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=171 Length=14
Motif3 Start=5 Length=14
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay