3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07508

Details:

PFam ID : PF07508

PFam Domain Description : Recombinase

Number of Sequence in 50% Dataset : 741

Number of Sequence in Full Dataset : 1836

Average sequence length: 103.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07508	Q692K4_YEREN_31_191	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07508	Q8YWY3_NOSS1_180_320	100

Sequence based PCA Plot of the family - PF07508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay