3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04565

Details:

PFam ID : PF04565

PFam Domain Description : RNA polymerase Rpb2, domain 3

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 580

Average sequence length: 64.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04565	B8P210_POSPM_194_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04565	Q3LVX3_BIGNA_438_504	98.1

Sequence based PCA Plot of the family - PF04565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay