3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11603

Details:

PFam ID : PF11603

PFam Domain Description : Regulatory protein Sir1

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 8

Average sequence length: 111

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11603	Q94M05_9VIRU_2_329	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11603	A7TTF0_VANPO_42_173	100

Sequence based PCA Plot of the family - PF11603 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay