3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04321

Details:

PFam ID : PF04321

PFam Domain Description : RmlD substrate binding domain

Number of Sequence in 50% Dataset : 342

Number of Sequence in Full Dataset : 1675

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04321	Q2KZH7_BORA1_17_121	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04321	C0CVS6_9CLOT_1_352	100

Sequence based PCA Plot of the family - PF04321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=69 Length=17
Motif3 Start=166 Length=8
Motif4 Start=112 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay