3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01365

Details:

PFam ID : PF01365

PFam Domain Description : RIH domain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 207

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01365	A8Q1X7_BRUMA_1443_1518	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01365	Q22C42_TETTH_1620_1823	100

Sequence based PCA Plot of the family - PF01365 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=86 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay