3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02527

Details:

PFam ID : PF02527

PFam Domain Description : rRNA small subunit methyltransferase G

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 1314

Average sequence length: 180.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02527	C4IKJ0_CLOBU_16_169	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02527	E1QXM1_OLSUV_28_239	100

Sequence based PCA Plot of the family - PF02527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=47 Length=11
Motif2 Start=2 Length=8
Motif3 Start=96 Length=8
Motif4 Start=23 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay