3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01815

Details:

PFam ID : PF01815

PFam Domain Description : Rop protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 22

Average sequence length: 55.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01815	E6PGR7_9ZZZZ_2_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01815	E9VI01_ECOLX_26_64	100

Sequence based PCA Plot of the family - PF01815 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay