3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14354

Details:

PFam ID : PF14354

PFam Domain Description : Restriction alleviation protein Lar

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 87

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14354	A5UNN4_METS3_5_68	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14354	B0VSY2_ACIBS_12_98	100

Sequence based PCA Plot of the family - PF14354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=11
Motif2 Start=21 Length=8
Motif3 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay