3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06325

Details:

PFam ID : PF06325

PFam Domain Description : Ribosomal protein L11 methyltransferase (PrmA)

Number of Sequence in 50% Dataset : 291

Number of Sequence in Full Dataset : 1549

Average sequence length: 223.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06325	A2I310_9CAUD_45_256	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06325	A5ZVQ3_9FIRM_2_170	100

Sequence based PCA Plot of the family - PF06325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=345 Length=11
Motif2 Start=234 Length=8
Motif3 Start=212 Length=11
Motif4 Start=185 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay