3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13408

Details:

PFam ID : PF13408

PFam Domain Description : Recombinase zinc beta ribbon domain

Number of Sequence in 50% Dataset : 491

Number of Sequence in Full Dataset : 1282

Average sequence length: 61.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13408	C5EHX1_9FIRM_7_133	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13408	Q9L1H4_STRCO_317_375	100

Sequence based PCA Plot of the family - PF13408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay