3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00620

Details:

PFam ID : PF00620

PFam Domain Description : RhoGAP domain

Number of Sequence in 50% Dataset : 658

Number of Sequence in Full Dataset : 1966

Average sequence length: 144.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00620	D1R8S4_9CHLA_210_339	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00620	F2QTY8_PICPA_112_354	100

Sequence based PCA Plot of the family - PF00620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=8
Motif3 Start=115 Length=14
Motif4 Start=202 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay