3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12614

Details:

PFam ID : PF12614

PFam Domain Description : Ribosome recycling factor

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 39

Average sequence length: 121.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12614	Q6LS99_PHOPR_2_129	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12614	Q6LS99_PHOPR_2_129	97.3

Sequence based PCA Plot of the family - PF12614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=118 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay