3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00338

Details:

PFam ID : PF00338

PFam Domain Description : Ribosomal protein S10p/S20e

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 728

Average sequence length: 95.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00338	A9P907_POPTR_110_172	56.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00338	Q18GP6_HALWD_5_99	100

Sequence based PCA Plot of the family - PF00338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=63 Length=8
Motif3 Start=3 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay