3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02565

Details:

PFam ID : PF02565

PFam Domain Description : Recombination protein O C terminal

Number of Sequence in 50% Dataset : 377

Number of Sequence in Full Dataset : 1139

Average sequence length: 151.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02565	E4T133_PALPW_17_149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02565	B2KBR3_ELUMP_82_204	100

Sequence based PCA Plot of the family - PF02565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=116 Length=8
Motif3 Start=62 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay