3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04964

Details:

PFam ID : PF04964

PFam Domain Description : Recombinase Flp protein N-terminus

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 538

Average sequence length: 46.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04964	E1NUB4_9LACO_2_95	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04964	D2TIS6_CITRI_8_56	98.6

Sequence based PCA Plot of the family - PF04964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay