3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12338

Details:

PFam ID : PF12338

PFam Domain Description : Ribulose-1,5-bisphosphate carboxylase small subunit

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 103

Average sequence length: 40.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12338	Q99FL0_9PICO_1_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12338	D7SIZ1_VITVI_1_23	100

Sequence based PCA Plot of the family - PF12338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay