3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01248

Details:

PFam ID : PF01248

PFam Domain Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 1425

Average sequence length: 91.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01248	E2RA36_CANFA_98_150	16.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01248	A8NXH9_COPC7_53_122	99.7

Sequence based PCA Plot of the family - PF01248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=9 Length=8
Motif3 Start=45 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay