3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00268

Details:

PFam ID : PF00268

PFam Domain Description : Ribonucleotide reductase, small chain

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 1298

Average sequence length: 243.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00268	Q5DVN0_BACSU_1_98	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00268	D6PL21_9ZZZZ_12_158	100

Sequence based PCA Plot of the family - PF00268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=11
Motif3 Start=38 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay