3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00347

Details:

PFam ID : PF00347

PFam Domain Description : Ribosomal protein L6

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 2714

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00347	C3YZT6_BRAFL_1_49	61.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00347	B6BZG8_9GAMM_1_43	57

Sequence based PCA Plot of the family - PF00347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=14 Length=27
Motif2 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay