3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11993

Details:

PFam ID : PF11993

PFam Domain Description : Ribosomal S4P (gammaproteobacterial)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 51

Average sequence length: 157.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11993	E1DPE2_VIBPA_1_72	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11993	Q1ZC42_9GAMM_1_179	100

Sequence based PCA Plot of the family - PF11993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay