3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02197

Details:

PFam ID : PF02197

PFam Domain Description : Regulatory subunit of type II PKA R-subunit

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 184

Average sequence length: 36.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02197	Q4Q3I2_LEIMA_80_119	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02197	Q4YYC4_PLABA_23_55	97.2

Sequence based PCA Plot of the family - PF02197 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=18
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay