3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05508

Details:

PFam ID : PF05508

PFam Domain Description : RanGTP-binding protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 54

Average sequence length: 288.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05508	C4Y511_CLAL4_1_323	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05508	C4Y511_CLAL4_1_323	100

Sequence based PCA Plot of the family - PF05508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=89 Length=11
Motif3 Start=17 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay