3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04479

Details:

PFam ID : PF04479

PFam Domain Description : RTA1 like protein

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 609

Average sequence length: 211.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04479	B6QKW1_PENMQ_1_69	78.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04479	A5DBX6_PICGU_147_408	100

Sequence based PCA Plot of the family - PF04479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=205 Length=8
Motif2 Start=225 Length=8
Motif3 Start=246 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay