3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12333

Details:

PFam ID : PF12333

PFam Domain Description : Rix1 complex component involved in 60S ribosome maturation

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 122

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12333	D0NG30_PHYIT_140_259	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12333	D2UXC8_NAEGR_136_280	100

Sequence based PCA Plot of the family - PF12333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay