3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03090

Details:

PFam ID : PF03090

PFam Domain Description : Replicase family

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 103

Average sequence length: 125.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03090	E6KW72_9PAST_1_70	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03090	E6KW72_9PAST_1_70	100

Sequence based PCA Plot of the family - PF03090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=77 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay