3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01163

Details:

PFam ID : PF01163

PFam Domain Description : RIO1 family

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 775

Average sequence length: 168.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01163	B2BK90_9PEZI_58_137	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01163	C4Q8V4_SCHMA_115_326	100

Sequence based PCA Plot of the family - PF01163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=69 Length=8
Motif3 Start=52 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay