3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02042

Details:

PFam ID : PF02042

PFam Domain Description : RWP-RK domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 175

Average sequence length: 50.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02042	C0A6A5_9BACT_1_30	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02042	D2VG10_NAEGR_60_119	100

Sequence based PCA Plot of the family - PF02042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay