3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10214

Details:

PFam ID : PF10214

PFam Domain Description : RNA polymerase I-specific transcription-initiation factor

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 87

Average sequence length: 542.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10214	A6QX96_AJECN_367_639	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10214	A7EXZ4_SCLS1_211_425	95.3

Sequence based PCA Plot of the family - PF10214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=303 Length=8
Motif3 Start=59 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay