3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00637

Details:

PFam ID : PF00637

PFam Domain Description : Region in Clathrin and VPS

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 1230

Average sequence length: 134.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00637	E2LEC5_MONPE_37_156	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00637	E7R6P2_PICAD_402_559	91.7

Sequence based PCA Plot of the family - PF00637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay