3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00154

Details:

PFam ID : PF00154

PFam Domain Description : recA bacterial DNA recombination protein

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 963

Average sequence length: 271.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00154	A8RVZ0_9RHIZ_3_145	55.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00154	Q555F1_DICDI_140_266	99.6

Sequence based PCA Plot of the family - PF00154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=40 Length=8
Motif2 Start=4 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay